Documentation

This work contains code for:

• The PREDICT software with example usage:

Documentation:

• PREDICT Class
  • PREDICT
• Models
  • BayesianModel
  • EvaluatePredictions
  • PREDICTModel
  • RecalibratePredictions
• Metrics
  • AUPRC()
  • AUROC()
  • Accuracy()
  • CITL()
  • CalibrationSlope()
  • CoxSnellR2()
  • F1Score()
  • OE()
  • Precision()
  • Recall()
  • Sensitivity()
  • Specificity()
  • SumOfDiff()
  • TrackBayesianCoefs()
• Plots
  • AUPRCPlot()
  • AUROCPlot()
  • AccuracyPlot()
  • BayesianCoefsPlot()
  • CITLPlot()
  • CalibrationSlopePlot()
  • CoxSnellPlot()
  • ErrorSPCPlot()
  • F1ScorePlot()
  • MonitorChangeSPC()
  • NormalisedSumOfDiffPlot()
  • OEPlot()
  • PrecisionPlot()
  • PredictorBasedPlot()
  • SensitivityPlot()
  • SpecificityPlot()
  • plot_calibration_yearly()
  • plot_count_of_patients_over_threshold_risk()
  • plot_method_comparison_metrics()
  • plot_patients_per_month()
  • plot_predictor_distributions()
• Triggers
  • SPCTrigger()
  • TimeframeTrigger()
• Tests
  • PREDICT
  • Metrics
  • Models
  • Triggers

• Data simulation experiments and notebooks

• Experiments on refitted real world models (QRISK2, eFalls) using Connected Bradford data